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category:tutorials - imagej

Apr 03, 2020 · Karios Instruments has a number of interesting Fiji tutorials (the same page shows tutorials on using CellProfiler, too). Tutorials for software developers and scripters. See Development Tutorials. See also. Presentations about ImageJ; Fiji YouTube channel; ImageJ videos and Fiji videos on YouTube; Lecture BioImage Analysis 2020 videos on

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machine-learning classification of texture features of

Nov 25, 2020 · The large volume and suboptimal image quality of portable chest X-rays (CXRs) as a result of the COVID-19 pandemic could post significant challenges for radiologists and frontline physicians. Deep-learning artificial intelligent (AI) methods have the potential to help improve diagnostic efficiency and accuracy for reading portable CXRs. The study aimed at developing an AI imaging …

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trajclassifier - imagej

Aug 24, 2016 · This Fiji plugin loads trajectories from TrackMate (exported via the action "Export trajectories"), characterize them using TraJ and classificate them into normal diffusion, subdiffusion, confined diffusion and directed/active motion by a random forest approach (through Renjin). It supports local analysis and is therefore able to split a single trajectory into segments with different motion types

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Machine learning based classifiers used quite often for predicting forest cover types, are the Naïve Bayes classifier, the k-Nearest Neighbors classifier, and the Random forest classifier. This paper is directed towards examining all of these classifiers coupled with feature selection and attribute derivation in order to evaluate which one is

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trainable weka segmentation: a machine learning tool for

Summary: State-of-the-art light and electron microscopes are capable of acquiring large image datasets, but quantitatively evaluating the data often involves manually annotating structures of interest. This process is time-consuming and often a major bottleneck in the evaluation pipeline. To overcome this problem, we have introduced the Trainable Weka Segmentation (TWS), a machine learning

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scripting the trainable weka segmentation - imagej

Jan 23, 2020 · Here we can select the number of expected clusters, the number of samples per cluster used for training and the clustering method. The default values of 5 clusters, 1000 samples and “SimpleKMeans” involve that 5000 pixels will be used for training a k-means classifier and the resulting image will be an integer image containing labels in the range of [0-4]

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imagej - weka segmentation in batch mode

> Hello Aryeh and Will, > > For the classification task I think it's a bit risky to use a delay anyway > because you don't know how long the classification will take. Have you > tried using a script instead of a macro? That allows you to have much more > control over the images and the commands are executed as in a regular > program, so you won't need any wait call

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